EpiNow2

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Sacema features

1

Draft PR of features added at SACEMA.

seabbs

This PR is meant to supersede #213 and #214. It - finalises the work commenced in #214 to support [three different models](https://github.com/epiforecasts/EpiNow2/pull/214#issuecomment-753024893) - merges #214 into #213 and implements most...

sbfnk

add more flexibility with delays

4

This adds support for - fixed delays (mean only), or fixed delay distributions (mean + sd) - fixed truncation distributions (mean + sd) as well as unit tests for these....

sbfnk

option for secondary baseline

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Adds a baseline level to the secondary model, i.e. a constant component that is not affected by the primary data stream (somewhat akin to the endemic component in `hhh4`. This...

sbfnk

pitmonticone

Hi, I am new to modeling and EpiNow2. After running my dataset and the codes provided in your examples, I am able to get the prediction results. I was curious...

furqan915

EpiNow2 v1.4.0 CRAN release planning

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To do: - [ ] Promote to issues and make a project board for this list - [x] Clean up issues and milestones - [x] Review and merge pull requests...

seabbs

Is there documentation for some of the models used?

1

I am trying to understand how the scaling factor is applied in the observation model (i.e. `obs_opt`). The mean and sd are to be provided for the underlying distribution, but...

affans

Suggested changes to address issues: #283 - correcting implementation of zero_threshold #284 - adding option for filtering leading zeros I'm not sure how the error handling in EpiNow2 works, so...

LloydChapman

For my particular use case, it would be helpful to have an option not to filter zeros in the reported case time series before the first reported case as is...

LloydChapman