epi-gene

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Using RNA for MotifSeq

Hi. I tried the above but the motifseq is yielding no results. The hit probabilities are 0 for all the reads.

Using RNA for MotifSeq

Is there a way to calculate them manually ?

Using RNA for MotifSeq

fast5 | readID | model | start | end | length | distance_score | model_mean | model_stdev | Z-score | p-value | hit_Probability 8e91fa7d-fd33-422b-8dfb-69915b17aa8d.fast5 | 8e91fa7d-fd33-422b-8dfb-69915b17aa8d | last50 | 11839...

Using RNA for MotifSeq

You did mention > The p-values and hit probabilities provided are based on loose modelling of negative background scores for a number of k-mers. It is currently only modelled on...

Using RNA for MotifSeq

@Psy-Fer Would MotifSeq be able to detect multiple Motif hits within a single read ? Or would it display only the high scoring hit ?

Using RNA for MotifSeq

Ok. Will try that.