Enrico Ferrero

Are you accepting feature requests? If yes, I think it'd be great to have collections of histone marks from ENCODE and Roadmap Epigenomics, similar to encode_tfbs, cistrome_cistrome or cistrome_epigenome. Thanks!

Negative c entry in table. Bug with userSetsLength; this should not happen.

9

I created a custom LOLA database using the instructions in the README.md file. The database loads fine and is cached without problems. However, when I run `runLOLA()` I get this...

Can't download PharmacoSets and perturbation signatures

9

I'm having troubles downloading the LINCS L1000 perturbation signatures: ```{r} > l100.genetic.pertsig l100.compounds.pertsig

What nomenclature is used for the CMap and LINCS L1000 compounds?

2

Not really an issue, just a question I couldn't find the answer to in the docs. What nomenclature or ontology is used to name compounds in the CMap and LINCS...