endrebak

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icon company NTNU icon location San Junipero icon location PhD candidate emeritus. Bioinformatics/blockchain/graphics/web. Low-level + functional programming. Please open issues or ask questions in public forums.

Results 424 comments of endrebak

Conda: Cannot install under python 3.10

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Conda: Cannot install under python 3.10

Looking closer at this it seems like there is an unrelated constraint in some dependencies of the dependencies.

Conda: Cannot install under python 3.10

Could you use pip for now?

Conda: Cannot install under python 3.10

Just to make sure: `conda config --show channels` returns ``` channels: - conda-forge - bioconda - defaults ``` Right? I can reproduce, but I am on macOS so YMMV

Conda: Cannot install under python 3.10

Using mamba I got a slightly less meaningless error message: ``` mamba install -c bioconda pyranges==0.0.113 (py310) __ __ __ __ / \ / \ / \ / \ /...

Conda: Cannot install under python 3.10

Just testing changing various things that were different from my other recipes: https://github.com/bioconda/bioconda-recipes/pull/32160

Conda: Cannot install under python 3.10

There are others having similar problems: https://github.com/bioconda/bioconda-recipes/issues/32088 So I do not think this is pyranges-specific

Conda: Cannot install under python 3.10

Or use pip :) This only happens in conda. I'll get around to fixing it there soon.

Join with empty ranges

Thanks! Will look at it tomorrow :)

Join with empty ranges

Just documenting further weirdness that I also need to fix: ``` # import pyranges as pr # a = pr.from_string("""Chromosome Start End # chr2 0 5""") # b = pr.data.aorta()...