endrebak

That is the reason for pyranges removing those entries; to avoid having to promote columns to floats. If you find a solution feel free to ping me and I'll help...

Thanks. I probably wont have the time to look at this until next week. On Thu, Jul 21, 2022 at 6:35 PM Fairlie Reese ***@***.***> wrote: > Fixes #274 >...

Thanks for reporting this! On Monday, March 7, 2022, Dongze He ***@***.***> wrote: > In the introns() function, the inplace=True argument used in the > following line will trigger a...

I should add a warning that multiple CPUs is currently not supported. Thanks :) On Monday, March 7, 2022, Dongze He ***@***.***> wrote: > Thanks for your quick reply! One...

Does 0.0.37 work for you? `pip install sorted_nearest==0.0.37 --no-cache-dir; python -c "import sorted_nearest"`

DataFrames can only have one name per column. Therefore I cannot allow "chrom" and "Chromosome" to refer to the same column. If I allowed pyranges to have aliases for column...

Could you please post an example or send me the files you are using? Thanks for reporting :) On Friday, March 26, 2021, paolacornejo ***@***.***> wrote: > Hello, > I...

Note to self: this is actually something I could add a generative test for since it has an easy-to-test property.

Thanks for the question. I do not see how to find the introns without knowing the transcript, but I am eager to hear suggestions. ``` import pyranges as pr gr...

Any such method would need to extract info about the transcript from the exon_id column AFAICS, which I'll help you with if you have some example data. Is this causing...