elzadgeorge

Error in Pmap[, 1] : incorrect number of dimensions

2

CMplot(df_whole, plot.type="m",type = "p", LOG10 = TRUE,multracks=TRUE,threshold=c(5e-8,1e-5),threshold.lty=c(1,2), threshold.lwd=c(1,1), threshold.col=c("red","blue"), amplify=TRUE, signal.col= c("red","green"), signal.cex=1, file="jpg",file.name="",dpi=300,file.output=TRUE, verbose=TRUE, highlight=SNPs, highlight.text=SNPs, highlight.text.cex=1.4)

SER_phase_common

3

I performed phasing for mom-child duos (N=2326) using phase_common. After the switch step, I calculated the Switch Error Rate (SER) and found it to be around 0.51-0.91 across chromosomes 1-22....