David Heller

Hi, I get the exact same samtools error. I found that it is caused by SAM records with all the bases soft-clipped so that the CIGAR is just `405324S` or...

Hi, thanks for the good question. At the moment SVIM cannot be run with multiple threads unfortunately. But in my experience, the speed of SVIM was sufficient to process even...

Okay, I agree that this would be a useful feature. I put it on my to-do list but cannot promise anything because of my busy schedule right now. For your...

Hi Juan, first of all, sorry for my late reply and thanks for your question. Unfortunately, there are no real updates on this except that multi-threading is still on my...

Hi Guillaume, thanks for reporting this issue and sorry for my late reply. Interspersed duplications in SVIM-asm are defined by a) a source region and b) an insertion location where...

Hi Dengfeng, thanks for your question. Unfortunately, SVIM-asm does not support multi-sample SV calling. However, you can run SVIM-asm separately for each sample (as you already did) and merge the...

Hi Dengfeng, when you run SURVIVOR it will try to combine similar calls from different samples. The genotypes of the merged calls will either reflect the genotype in the original...