elcega

Understanding coefficients permanova group comparison

1

Hi, I am following one of the tutorials: https://microbiome.github.io/MiaBook/microbiome-diversity.html When running `coef

Plot shows only one coldata group on x-axis

3

When I run the following code, my x-axis only shows one group instead of the 7 "times" values(stations in my case). ``` res

Extract the genes of each group pattern

2

Can you extract as a data.frame a list of the genes included on each of the groups generated after ```degPlotCluster(res3$normalized, "condition")``` ?