Eileen Xue

Hi all, In case anyone still watching this issue. We have an update to fix this issue now. Thanks, Eileen

Hi, The RATTLE should work with GCC version 9.3. Could you please provide your RATTLE command line to give us more information? This can help us better diagnose the issue....

Hi Levi, Try to use the gcc version 9.3.0. Also, which CPU do you use? Does it support sse4.1? RATTLE sub-module spoa has this error "Illegal instruction (core dumped)" with...

Hi, In your RATTLE correct command, it should be `-c rattle/$s/clusters/clusters.out` which points to `clusters.out` file location, not the folder location. Eileen

RATTLE checks whether the input and output files or folder exits and provides error report. However, it won't check whether it points to a file or a folder.

Hi Vivian, The way you did for clustering is correct. And the problem is probably because RATTLE is running out of memory. Trying to increase the allocated RAM size or...

Hi, You can have a look at the [memory usage figure](https://genomebiology.biomedcentral.com/articles/10.1186/s13059-022-02715-w#Fig6) in our paper. Otherwise, I need more information like the number of reads or the fastq file size to...

Hi, This problem seems not from the error correction step but from the clustering step. Please provide answers to the following questions to help us identify the issues and provide...

Hi, Your RATTLE error correction step command is incorrect. To specify the outputs, you don't need to list all the output files' names and locations. Only need an output folder...

1. Your new output command is correct. If you want to use multiple fastq files as input, the format should be `-i input_1.fq,input_2.fq,...,input_n.fq`. All files must be separated by comma,...