Niko Ehrenfeuchter
Niko Ehrenfeuchter
### Description The discussion in #175 links to a ticket in the "official" Confluence Server JIRA describing a workaround by surrounding the `label` in the request by double quotes. ###...
Optionally load the `SlideBook6Reader.jar` if the file is present. This adds (native) support for loading 3i's `.sld` files. The JAR can be fetched from the corresponding [SlideBook Fiji update site][1]...
This PR is adding unit tests for the functions added in 3e58906d71466e9396b6b6b03c68f55767459a82 ff.
Use the "setuptools_scm" package to automatically generate the version of the package as well as the corresponding variable available in the code. This fixes issue #86 while still leaving open...
The fix merged in #86 being https://github.com/imcf/python-bioformats/blob/08161368eebea17578d03e7c8fe52211d4f454ce/setup.py#L42-L45 got silently removed (again) in 2d487239b3a8d531e69342cec89ca2395cd0e56a, resulting in a call to ``` import bioformats print(bioformats.__version__) ``` returning `’0.0.0’` (again).
Documentation states that testing is done via nosetests: https://github.com/CellProfiler/python-bioformats/blob/cac3116aa1abae7f9d973464a8bb937df362e7f6/docs/index.rst#L28-L39 This gave me a really hard time until I realized that tests were failing due to the fixture `tmpdir` not being...
Bio-Formats 5.1 and the 2015-01 OME Data Model introduced support for units of measurements, e.g. the `PhysicalSizeX` attribute is no longer necessarily reporting the size in microns. Instead, an additional...
The docstring is broken in two ways: https://github.com/CellProfiler/python-bioformats/blob/4ca7b3c70b48a958414cab743ad5f0e98d4e7168/bioformats/omexml.py#L448-L453 1. Python-syntax is inconsistent, i.e. the code will not run (`omemetadata` vs. `md`). 2. Sphinx is not rendering the example correctly due...
On Ubuntu 20.04 the `find_javahome()` function doesn't work as expected as it is cutting away too much of the path. To make it work, I had to use the same...
The `PyGObject` wheel wouldn't build until those two packages were installed.