Egor Dolzhenko
Egor Dolzhenko
Apologies about the error. Are you on macOS? If yes, could you please check if `brew install fmt` solves the problem? If you are using Linux, you can download the...
Thank you for letting me know, Robert. We'll work on fixing the issue first thing tomorrow. Meanwhile, would you be open to using the pre-built binary on your cluster? If...
Hi Robert, The binary can be downloaded from this page: https://github.com/Illumina/REViewer/releases/tag/v0.2.4 The file REViewer-v0.2.4-linux_x86_64.gz is located in the "Assets" section of that page. Once you download the file to your...
Hi Robert, I just wanted to let you know that we have resolved the "fmt" library issue you reported. You should now be able to build REViewer from source on...
Hi Hasna, Thanks for the question. REViewer estimates the fragment length from read pairs that align within the sequence surrounding the repeat. Are you extracting reads from the realigned BAM...
Thank you for the question, Fei. Did you set `--region-extension-length` parameter when you ran ExpansionHunter? Best wishes, Egor
Yes, that's right. The latest version of REViewer includes the matching `--region-extension-length` parameter. I will make a binary release of the latest version later today.
Thanks for the suggestion! We could let users specify paths to Boost and HTSlib if they are already installed on their system.
Great suggestions! I will put together a proposal of the changes and, if you don't mind, run it by you.
Thank you for the suggestion! This is not possible at the moment, but we can certainly add this feature.