Chris Markiewicz

Results 468 issues of Chris Markiewicz

### What version of fMRIPrep are you using? 20.2.0rc0 ### What kind of installation are you using? Containers (Singularity, Docker), or "bare-metal"? TACC Run ### Did fMRIPrep generate the visual...

bug
effort:medium
impact:medium
backwards compatible
workflows

The ICA-AROMA reportlet can get very long for long duration BOLD runs, and is not very diagnostic of general fMRIPrep performance. Collapsing it by default, possibly with a

plotting
effort:low
impact:high
backwards compatible
reports

Check out https://github.com/leeoniya/uPlot and their [example plot](https://leeoniya.github.io/uPlot/bench/uPlot.html) with 166k points. It's designed to use very little memory. This might be a good alternative to our existing fMRIPlot line plots, but...

plotting
effort:medium
impact:medium
hackathon

Watching `htop`, I don't think `Atropos` is ever spawning extra processes the way `antsRegistration` does, and its CPU usage never tops 100%. Does someone else have any evidence to justify...

We should make the repr show something of the values. See, e.g.: https://sentry.io/organizations/poldracklab/issues/1575521394/tags/output_spaces/

`imagecodecs` is now required by `scikit-image`, which has extremely finicky installation requirements, so our old minimum requirements for `pip` and `setuptools` are no longer usable. This is mostly because we...

discussion

See poldracklab/mriqc#552, poldracklab/mriqc#554, poldracklab/fmriprep#659.

enhancement
effort:medium
impact:low

We have a monthly release cycle, and a common feature of each month is to remind people with open PRs that the release is coming up in 1 or 2...

I ran [ruff](https://docs.astral.sh/ruff/) on gradunwarp after the latest merge. I found a number of cleanups, including some things that I think are bugs that need fixing. I tried to keep...

This removes the cibuildwheel infrastructure needed to compile C extensions. Instead, a single wheel is built and then explicitly tested on Python 2 and 3 across the three operating systems...