Chris Markiewicz
Chris Markiewicz
Seems plausible. @caroleguedj Please upgrade to the latest release and see if you get the same result.
Can you share the file layout for a subject, and the contents of a fieldmap's JSON sidecar that's failing to be applied?
Ah, the BIDS-URI support has a bug in that version. Should be fixed in the next release. In the meantime, you can revert to subject-relative paths, so: ```yaml "IntendedFor": [...
Just adding a note that I'm having trouble finding records of when we were hitting this. My memory was that there were small shears causing ITK to reject images, but...
By the NIfTI standard, if `sform_code > 0`, then the sform should be used, and the `qform` only consulted if `sform_code == 0 && qform_code > 0`. The preference of...
Can you try with the latest version and verify this hasn't already been fixed?
I suppose I would check your metadata and make sure that the `PhaseEncodingDirection` metadata for your BOLD and fieldmaps are all correct. I would also try running TOPUP yourself and...
Conceived as an environment manager, which also happens to be an installer, I think https://github.com/mason-org/mason.nvim/issues/1841 is related. Consider something like: ```lua opts = { python = { venv = "uv",...
This will render the synthetic dataset unvalidatable until a new release of BIDS. I think a small example would make more sense, and then it could be limited to the...
Thanks again for doing this, @DimitriPapadopoulos! Made a bunch of small comments.