Chris Markiewicz

``` 240724-20:22:13,885 nipype.workflow INFO: [Node] Executing "fsdir_run_20240724_202139_7f3a5ef2_8f8b_4828_b5fa_f486b97008ad" 240724-20:22:13,939 nipype.workflow INFO: [Node] Finished "fsdir_run_20240724_202139_7f3a5ef2_8f8b_4828_b5fa_f486b97008ad", elapsed time 0.046097s. 240724-20:22:13,939 nipype.workflow DEBUG: Saving results file: '/work/fmriprep_24_0_wf/fsdir_run_20240724_202139_7f3a5ef2_8f8b_4828_b5fa_f486b97008ad/result_fsdir_run_20240724_202139_7f3a5ef2_8f8b_4828_b5fa_f486b97008ad.pklz' 240724-20:22:13,939 nipype.workflow WARNING: Storing result file without...

So what's happening is that you have an `fsaverage` directory from an older version of FreeSurfer. To keep FreeSurfer working correctly, we delete and replace with the bundled copy. If...

If your BOLD and T1w data are already in rough alignment (open as overlays in some viewer), then my recommendation would be `--bold2anat-init header`, which will skip the bulk registration...

A couple thoughts: 1) Why a class with only static methods? I think flat functions would make more sense and be consistent with this module. 2) Is it possible to...

@simkarwin Sorry about the long radio silence. Any interest in finishing this up?

@MEDFormat @Remi-Gau I've copied a pared down version of `ieeg_epilepsy` and replaced the `_ieeg.*` files with an `_ieeg.medd` directory and pushed to this PR. Making some additional changes to adjust...

Closing for now. Can be revived if MED is re-added to BIDS' support list.

Just updating this so anybody looking will understand it: In #836, a `_sync_kwargs` class variable was added to transformations. Here it's proposed to change the type to some sequence/container type...

The affine and header of the bottom slice should work for the 3d image. You can use numpy.stack to stack the slices.

Got it. There's no easy tool to solve this problem, then. You'll need to decide how you want to extrapolate the data, what field of view to resampled them into,...