Chris Markiewicz
Chris Markiewicz
This is an open issue and still needs to be implemented. I'm not sure what others are doing to retrieve these files. They exist in the working directory, but fMRIPrep...
Apologies for the brevity, was in a meeting. This still needs to be done. I think you're right that only the midthickness is resampled, since only that is used as...
https://bids-website--725.org.readthedocs.build/en/assets/img/logos/NIH.png instead of https://bids-website--725.org.readthedocs.build/en/725/assets/img/logos/NIH.png Not sure how to fix that...
This is an explicit helper to remind people to put gunzip interfaces if they need: https://github.com/nipy/nipype/blob/4d1352ade7171fd5f55eff62cee4c99a4f9cfed1/nipype/interfaces/spm/base.py#L617-L631 If SPM now allows compressed NIfTI, we could change it to something like: ```python...
Did earlier versions of CAT12 not support compression? If it has always supported compression, then you can just change `ImageFileSPM` to `ImageFile` in the input spec of the CAT12 interfaces,...
I think this is probably a change in Python's error messages, which should not be relied upon as an API. We should probably just do: ```python except NameError as e:...
If you run `mris_euler_number` from the same location you run your nipype script, what happens?
Do you have at least three echos? If not, fMRIPrep does not have anything useful to do with the echos. The log should make clear what decisions were made near...