fMRIprep did not generate multi echo outputs.

[TamerGezici]

What happened?

I ran fmriprep on multi echo data, but the outputs did not create any of the multi echo files

Input BIDS:

Output of prep:

What command did you use?

docker run -ti --rm \
    -v /f/Tamer/prep/bids_data:/data:ro \
    -v /f/Tamer/prep/output:/out \
    -v /f/Tamer/prep/freesurfer.txt:/license.txt:ro \
    nipreps/fmriprep /data /out participant \
    --fs-license-file /license.txt \
    --me-output-echos \
    --ignore slicetiming

What version of fMRIPrep are you running?

Latest

How are you running fMRIPrep?

Docker

Is your data BIDS valid?

Yes

Are you reusing any previously computed results?

No

Please copy and paste any relevant log output.

No response

Additional information / screenshots

No response

[tsalo]

Can you share the full stdout and stderr log files?

[effigies]

Do you have at least three echos? If not, fMRIPrep does not have anything useful to do with the echos. The log should make clear what decisions were made near the very beginning.