eds-slim

Thanks for yoru reply. I would imagine something like ``` df = data.frame( a=c(TRUE, FALSE, TRUE, TRUE), b=c(TRUE, TRUE, TRUE, TRUE), c=c(FALSE, TRUE, FALSE, FALSE), d=c(FALSE, FALSE, FALSE, TRUE) )...

I've resolved the issue by simply replacing `sorted_intersections` with `with_sizes %>% dplyr::select(order, intersection) %>% distinct() %>% arrange(order) %>% pull("intersection")` at the end of `upset_data()`, and then calling `upset` with `sort_intersections...

Thanks for taking this up! Is there anything I can test further or otherwise contribute from my side?

@oesteban @effigies: I looked into the issue a bit further and tried to run `mri_convert` on the offending `orig.mgz` outside the container, this works without error. As far as I...

The same error ``` mri_convert orig.mgz ./tmp.mri_nu_correct.mni.6097/nu0.mnc -odt float mri_convert.bin orig.mgz ./tmp.mri_nu_correct.mni.6097/nu0.mnc -odt float /opt/freesurfer/bin/mri_convert: line 3: 6272 Segmentation fault mri_convert.bin "$@" ERROR: converting to minc ``` occurs with the...

After further scrutiny I have been able to use the `-nocache` option to `volume_stats` as described [here](https://mailman.bic.mni.mcgill.ca/pipermail/minc-users/2008-April/002001.html) to get the `freesurfer recon-all` command to execute a little bit further. It...

Looking through the code, I notice that `recon-all` seems to be called with the ` -sd /freesurfer` option, thus overriding the `SUBJECTS_DIR` environmental variable. Do you think it would be...