gfakluge
gfakluge copied to clipboard
edawson
A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
Hello, when I git the code locally and execute make, the following error occurs `make: *** No rule to make target 'src/tinyFA/pliib/pliib.hpp', needed by 'build/main.o'. Stop. ` Looking forward for...
Hello,there is a bug in version 1.1.2 `(base) [libq@localhost gfakluge-1.1.2]$ make Makefile:37: *** missing separator. Stop. `
Hi @edawson, is it possible to power up `gfakluge` to be able to read compressed GFA format files?
Pertains to https://github.com/edawson/gfakluge/issues/51 Here's a PR with the inline methods I talked about. I guess we also have some commits from Erik about memmapping in our master branch. I'll let...
Dear @edawson, is there any way to subset only the regions, which have a degree higher than a specific threshold? Thanks!
gfak::mmap_open calls open with O_RDWR (read/write access). This fails with a cryptic error when the file is read-only: ``` odgi: /app/odgi/deps/gfakluge/src/gfakluge.hpp:569: size_t gfak::mmap_open(const string&, char*&, int&): Assertion `false' failed. ```
The gfakluge.hpp header consists mostly of methods that are neither inline nor template. That means it can't be included by multiple .cpp's, or else you will get redefinition errors at...