Edward Lau
Edward Lau
Agreed this will be very helpful!
Awesome! Thanks - will try.
Some like 1.1 are already changed to print(). Feel free to submit pull requests for other assignments.
I am looking at 7.2 and it doesn't look like the current code uses a sum() function. You can try to change the variable name from sum to something else.
Seems to work for me using the file you sent. Does this work? ``` fh = open('/path/to/mbox.short.txt') s = 0.0 count = 0 for line in fh: if not line.startswith("X-DSPAM-Confidence:"):...
It looks like one of the retrieved codons reads AGX which is not in the codon table. I assume the genome/annotation files are what you used for RNA-seq alignment and...
I would like to look into this. Would you mind sharing your rMATS output?
I was able to produce at least one error consistently from the A5_G4 sample. This particular rMATS result line in the A3SS file gave an error: ```bash 13271 "ENSMUSG00000053483" "Usp21"...
Can you try to see if [v0.3.5a](https://github.com/ed-lau/jcast/releases/tag/v0.3.5a) patched the issue?
Just making sure that v.0.3.5a is being used by your conda environment? Can you upload the log file?