Jana Ebler

icon indicating a website link https://marschall-lab.github.io/people/jebler/

icon company Heinrich-Heine University icon location Düsseldorf icon location Researcher (PostDoc) in Bioinformatics at Heinrich-Heine University Düsseldorf, Germany.

Results 3 issues of Jana Ebler

insertion REF alleles and deletion ALT alleles are always set to "N"

4 comment

Hi, I'm working with SV callsets produced by sniffles2 (v2.0.7). For deletions, the ALT sequence in the VCFs are alwasy set to `N`, while the REF field contains the reference...

Issue with VCF generated after running vg haplotypes

2 comment

**1. What were you trying to do?** I'm trying to run the haplotype sampling algorithm to create a VCF of the resulting subgraph with vg deconstruct. I used the commands...

Error when running kage index

4 comment

Hi, I'm trying to run the indexing step of kage on my data set but I get the following error: `ValueError: zero-size array to reduction operation maximum which has no...