Ethan Roy

Ah okay thanks, that is good to know! Our collaborators provided us with both the dwi series and fieldmaps and so we were trying to make use of those but...

Yes based on the sidecars it looks like the `PhaseEncodingDirection`s are different across the two series

Strange update: I just tried running the same call to qsiprep as above (minus the prefer-dedicated-fmaps flag) but using an older version of qsiprep (qsiprep-0.16.1) and things ran smoothly and...

I just heard back from our collaborators and unfortunately I don't think I can share the dataset with you based on our data usage agreement.