Dženan Zukić

icon indicating a website link https://www.kitware.com/dzenan-zukic/ icon indicating an email [email protected]

icon company @KitwareMedical icon location Carrboro, NC, USA icon location Staff R&D Engineer @ Kitware. Dealing with image analysis, deep learning, 3D space manipulation, surgical guidance, etc.

Results 653 comments of Dženan Zukić

WIP: ENH: Add watershed with distance map example.

Waiting for the next release of Python wheels sounds reasonable.

WIP: ENH: Add watershed with distance map example.

> not wrapped for input type `itk.Image[itk.UC,3], itk.Image[itk.UC,3], itk.Image[itk.F,3]` First use `itk_cast_filter` to convert UC to F, then do multiply with all 3 types of `itk.F`? Or multiply first with...

WIP: ENH: Add watershed with distance map example.

> end the Code.py file by writing the watersheds output This is preferable to keeping this PR open indefinitely. But before that, I will give it a crack, maybe even...

WIP: ENH: Add watershed with distance map example.

The Python test now passes. I also fixed a C++ compile error when legacy is OFF. Can you clean up this contribution so we can get it merged? @jhlegarreta please...

compare_to_baseline in parent directory CMakeLists.txt

Parent directory is built as part of ITKExamples, so it has access to all the CMake machinery. The example directory can be taken out of the hierarchy and it should...

Inconsistent Output Baseline Comparisons

We can set a deterministic seed in the examples which have some pseudo-randomization. Together with setting the number of work units to 1 it should produce a deterministic output.

Integration of itk.js / itk-vtk-viewer

Is this still relevant?

`to_multiscale` with `Methods.ITK_LABEL_GAUSSIAN` throws error for certain data types

Considering [wrapping specification](https://github.com/InsightSoftwareConsortium/ITK/blob/v5.3.0/Modules/Filtering/ImageGrid/wrapping/itkBinShrinkImageFilter.wrap#L5), enabling `ITK_WRAP_signed_long` during package creation should fix your problem. Read more about [ITKPythonPackage](https://github.com/InsightSoftwareConsortium/ITKPythonPackage/), and its [docs](https://itkpythonpackage.readthedocs.io/en/master/Build_ITK_Module_Python_packages.html).

ENH: Support nearest neighbor interpolator for montaging label maps

This is expected to pass after rebasing on #230.

[Feature request] Provide python wrapper / implementation to obtain stain matrix and concentrations only from image

This feature request seems somewhat related to #32 (its superset).