Dilmurat Yusuf
Dilmurat Yusuf
@HassanAmr @bgruening thanks guys! I am checking how I could plug this into the workflow of sra upload for ENA. will get back to you later.
@bgruening @s-will I am thinking to use the RNA-seq workflow which was used in our courses.
@bgruening @jfallmann sure, I do so
@bgruening I try to use subworkflow. Well, after adding a subworkflow, there are no options available for it even though it works fine as an independent workflow. any hints?
@bgruening the subworkflow only works when "copy and insert individual steps"
@bgruening for mapping, how to resolve the issue for the large data like genome. usually, a galaxy server has built-in index...
@bgruening when I using tophat to do mapping the outputs are empty without errors. using the same datasets, the Freiburg server generates the outputs with sizes. could you do a...
@bgruening please look at the following two examples. It seems tophat may have the issue on workbench. workbench, empty outputs: http://192.52.2.98/u/admin/h/unnamed-history freiburg, outputs with sizes: http://galaxy.uni-freiburg.de/u/dilmurat-yusuf/h/testtophat
@bgruening let me know when it is fixed so I can test the workflow.
@bgruening I want to integrate dexseq into the workflow, while the installation of the galaxy tool invokes the old dependency resolver where are some problems with the dependencies. I am...