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                                            dwucsf

<simpleError in checkwz(wz, M = M, trace = trace, wzepsilon = control$wzepsilon): NAs found in the working weights variable 'wz'>

@MichaelPeibo, do you have both integrated and original RNA counts within your single CDS?

<simpleError in checkwz(wz, M = M, trace = trace, wzepsilon = control$wzepsilon): NAs found in the working weights variable 'wz'>

Do you use the corrected, integrated data to plot your pseudotime trajectory and then replace the slot with original RNA count data to do downstream analyses?

<simpleError in checkwz(wz, M = M, trace = trace, wzepsilon = control$wzepsilon): NAs found in the working weights variable 'wz'>

@MichaelPeibo, can I see your code for how you are constructing your CDS with integrated data, running monocle to get your pseudotime trajectory, and then replacing the integrated counts with...

plot_pseudotime_heatmap not working in Monocle3

Hi @nesetozel, Yup, I troubleshot this for about a month. Finally got it to work. I was getting the same error, and I realized the problem was that I was...