Daniel Weindl
Daniel Weindl
Currently, there are way too many warnings issued in the test suite: base: 570 warnings optimize: 53 warnings hierarchical: 27 warnings select: 205 warnings petab: 40 warnings Some are from...
…can be computed Adds a check whether the amici model in an `AmiciObjective` is able to compute sensitivities w.r.t. to the objective parameters. Closes #1414 This raised the question of...
Related to https://github.com/AMICI-dev/AMICI/issues/2455 When we have an `AmiciObjective` and need to compute gradients, we should make sure that sensitivities can be computed w.r.t. all free parameters (this needs to be...
Currently, when loading optimization results from an HDF5 file, the complete results are read into memory. For large result sets, this takes pretty long. It would be convenient if the...
Avoid symbolic replacements for handling reserved symbols in amici. Instead, only handle them during code printing. This has the advantage that users won't be bothered by changed IDs. This, however,...
Some model entity IDs are replaced by `amici_{actual_id}` during model import, but the current PEtab parameter mapping generated by `amici.petab.parameter_mapping.create_parameter_mapping` will contain the original IDs instead of the amici-model-IDs. This...
We have a couple of -Werror options enabled when running on GHA. However, we should also check for the repo name. If amici is used in tests of any downstream...
https://cmake.org/cmake/help/latest/policy/CMP0167.html ``` CMake Error (dev) at CMakeLists.txt:123 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to...
Currently, AMICI's MATLAB interface is in a rather sad state. This is mostly due to breaking changes in the symbolic math handling in R2018A. I don't think that requiring R2017B...