Daniel Weindl
Daniel Weindl
There are currently frequent timeouts for `mac (3.11)` workflow runs. The by far [slowest](https://github.com/ICB-DCM/pyPESTO/actions/runs/8782850154/job/24097808694#step:6:240) test is: `239.30s call test/sample/test_sample.py::test_thermodynamic_integration` Can this be reduced to
> Visualization table references datasetId(s) {'model1_data1_IRsum'}, but no such dataset(s) exist in the measurement table Surfaced while testing https://github.com/PEtab-dev/libpetab-python/pull/255
Millard P, Smallbone K, Mendes P (2017) Metabolic regulation is sufficient for global and robust coordination of glucose uptake, catabolism, energy production and growth in Escherichia coli. PLOS Computational Biology...
Would be good to have a [CITATION.cff](https://citation-file-format.github.io/), showing how the benchmark collection is to be cited.
This will be helpful for others who want to add PEtab support to their tools to have appropriate test cases. Features would include, e.g.: - Parameterized condition table - Replicate...
Should cover how to suggest / add new models, minimum information, error reporting, agreement to license terms, ...
Draft. Previously, the math expression syntax wasn't specified. This was very problematic, because different libraries and programming languages have different names for the same functions, and more importantly, differ in...
It would be great to have the possibility to pass parameter names to fides to produce more informative messages. E.g. having a parameter name in `Exceeded lower bounds for indices...