dvirdi01

I ran rnabloom on each input file separately and it produced the transcripts for each of them. However, when I give it all the input files at once to make...

If I run it through snakemake by giving it all 17 input files would it again output just a single transcriptome.fq at the end? Or one for each input file?

Hi, I have run my files with both -k 10 e 5 and with the default settings in the past. It produces the transcriptome file for the default setting command...

Hi, I checked the output files for some of the processes that did run. IIt created consensi.fq, uncorrected,fq and corrected.fq hbut they are all 0 bytes. I am not sure...

1. none of my clusters.out files are 0 bytes so I think cluster and cluster extraction steps were working 2. this was my rule for clustering step: input: "data/.../..../{samle}.fastq.gz" output:...

1. Hi, isn't that what I did though? I gave the output file location as params.outdir? Edit: Oh I think I get what you were saying I had this earlier...

Hi, thanks for the reply. I didn’t understand why I would need to skip the extract clusters step. Wouldn’t that step be necessary to do the next step which is...