MusiteDeep

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I got this kind of error while trying to predict the phosphorylation sites in the dataset. could you help me through it, what is the problem? root@subash:/home/subash/Downloads/MusiteDeep/MusiteDeep# python predict.py -input...

dukkakc

Shift from Python 2.7 to Python 3

4

The code is valuable we will need to shift it to Python 3 to make it compatible with the latest libraries in tensorflow.

nadzhou

Give an argparse for the model selection as well.

2

nadzhou

Another issue that I face is that the nclass_init variable gets value of str weird enough. Here is the total error: ``` Traceback (most recent call last): File "predict_batch.py", line...

nadzhou

王博士您好，您在MusiteDeep: a deep-learning framework for general and kinase-specific phosphorylation site prediction一文中与其他几种深度学习模型进行比较，我在做赖氨酸PTM的识别，请问您是否能够提供DeepBind，DanQ等程序的相关代码。如果方便的话咱们直接邮箱联系[email protected]

baowz12345

testing dataset label?

2

Dear Dr. Wang, I am wondering where I could find the labeled testing data? Thank you!

minakoyang

关于MuSiteDeep使用的问题

2

你好，我是华中科技大学同济医学院的博士生，我在bioinformatics上看到您发表的这篇文献，想用您的方法进行磷酸化位点的预测，但是我在使用的过程中遇到了一些问题，想向你请教，我是一名医学生，计算机基础比较差，问题比较幼稚请见谅：我用的是Ubuntu，在按照说明进行操作后，出现了importerroe：no mudule named tensorflow，我pip install tensorflow后再运行，出现module object has no attribute ‘python’。我不知道下一步该怎么做，希望得到您的帮助。 我的微信 15271800795 我的QQ 270441776 非常抱歉打扰您~~谢谢

yangyangclover

Dear Dulinwang, Hello! When I tried this, It generated error. python train_general.py -input ../allseq20141110.fasta -output result_test_general.txt -residue-types S,T,Y python train_general.py -input ../allseq20141110.fasta -output result_test_general.txt -residue-types S,T ERROR: size of positive...

wyim-pgl

Bumps [keras](https://github.com/keras-team/keras) from 1.1.0 to 2.13.1. Release notes Sourced from keras's releases. Keras Release 2.13.1 What's Changed Fix timeseries_dataset_from_array counts when sequence_stride > 1 by @​basjacobs93 in keras-team/keras#17396 Fix doc...

dependabot[bot]