dudcha

Ah, yes, diploid is different. You’ll have to realign al the data to the new reference and run visualize assembly after that. I’ll add a check for diploid in the...

Hello gapalm, Sorry for the delay, was traveling. If you want to build the final map in diploid mode you will have to 1) index the new genome & prep...

Please share the full command, out and err stream. Which version are you using? Are the requirements met? Everything after the first :( does not matter: those files cannot be...

Ke-Shi, I do not understand from your answer: please confirm that you have run Juicer separately for the hetero-genome and are not using the one for the parent. I.e. the...

Your problem according to the log file is missing norm due to spar city of the matrix at default resolution for misjoin correction of 25kb: “Unable to dump java.io.IOException: Normalization...

Hello DongnaMa and wuxiiaopei0509, This is not a sufficiently detailed description of a problem for me to be able to meaningfully comment. Please submit the exact command as well as...

Hey DongnaMa, At some point we have stopped supporting the non-parallel version, so it may cause problems though if there are no error messages I imagine it is not that....

DongnaMa, Please see the previous message. -Olga > On Jun 4, 2020, at 12:02 AM, Luffy wrote: > >  > Hi Olga, > I recalculated in parallel version，with haploid...

Hi LIZW, Thanks for the kind words. Here is a slide re assembly format that might be of help. In this case _HiC.assembly (DNA Zoo convention) is the same as...

LIZW, This is calculated based on the assembly file. Please note that this corresponds to rawchrom stage and does not include final gaps between draft sequences. Sign refers to whether...