dudcha

Hi sunnycqcn and y842739756, Please check https://github.com/theaidenlab/AGWG-merge for more information on diploid. Thanks, Olga

Hi, Please consult Cookbook (dnazoo.org/methods) for discussion of typical scenarios that require changes in default parameters. See also similar threads on aidenlab.org/forum.html. Best, Olga > On Feb 12, 2019, at...

Hey melop, Sorry not sure I follow everything that is going on. You are saying you've started with a draft that was scaffolded with linkage data. Is this what you...

Ray, My questions remain the same as is the request to move to forum. These are not discussions of bugs. Please share your out and err streams for this to...

Hello Jin, Yes, your action to address the speed issue is correct regarding wrapping the fasta. This is discussed on the forum (aidenlab.org/forum.html ). I believe also this is done...

I am sorry, this is too vague of a description to diagnose. Please note that 8 rounds of correction are almost never necessary and you get the most bang for...

Hi Lu and ershuowang, There are two typical reasons for the tail: write error. One is the bash version, it needs to be >=4 to support associative arrays, and another...

P.S.: see also this, more specifically re suggestion on sigpipe: https://github.com/theaidenlab/3d-dna/issues/29#issuecomment-437713884

Hi, If you are experiencing the same error than either you are using a review assembly file that is mismatched with the fasta, or you have issues with carriage return...

Hi WTarabidopsis, You could use 3d-dna/utils/convert-cprops-and-asm-to-assembly to convert split.cprops and split.asm to create a new split.assembly file and then use that as input into run-asm-pipieline-post-review. Please note however that we...