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                                            Dustin Lyfoung

List index out of range error in collapse_isoforms_by_sam.py

I am getting the same thing. Traceback below: `Traceback (most recent call last): File "/opt/conda/bin/collapse_isoforms_by_sam.py", line 235, in main(args) File "/opt/conda/bin/collapse_isoforms_by_sam.py", line 185, in main for recs in iter: #...

List index out of range error in collapse_isoforms_by_sam.py

My issue ended up being an upstream isoseq3 issue. I was on version 3.2.2 and upgraded to 3.3.0. Must have been something with the headers that were coming out of...

igblast setup

I have a similar issue. I am running igblast on Windows and am observing error: "BLAST query/options error: Germline annotation database C:\Program Files\ncbi-igblast-1.9.0\bin\internal_data\human\human_TR_V could not be found in [internal_data] directory"...