Drew T. Doering

Hey @daler, getting back around to this now! I pasted your `test_issue_213` function into a new script, and am getting the same results as you on the latest `v0.12` tag...

For the sake of completeness, here is the script (`gffutils_debug.py`) that I'm running your test with: ```python #!/usr/bin/env python import sys import os import tempfile from textwrap import dedent gffutils_git_path...

Running into something similar -- I have a rule that only uses `awk` and thus does not require a conda env, but the linter fails because that rule doesn't have...

FWIW, I just used `updateR` and it took me from R v3.5.0 straight to R v3.6.0, which skips v3.5.1, 3.5.2, and 3.5.3. This is from RStudio v1.2.1335 running on MacOS...

Ah, gotcha, that's interesting. And yeah, I have no reason to believe that calling `R` from a terminal session would behave differently than opening the stand-alone R app, but who...

I know this thread has trailed off, but I wanted to add to the discussion because I think there's still a need for some sort of "official" GFF validator, test...

That sounds nice! Glad to see that it is YAML-based and not something complex or particularly domain-specific. However, can you clarify the concept of "profiles"? To my ear, it sounds...