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Results 3 issues of


                                            dtaliun

Bug for nonPAR chrX: heterozygous haploids in the phased output.

Hi, When phasing non-PAR X, if present in the input VCF/BCF, the heterozygous haploids are not correctly set to missing. Here is the problematic code: ``` for (uint32_t v =...

Phasing chromosome X is wrong when males are encoded as haploids in input VCF/BCF

Hi, Phasing results for chromosome X non-PAR regions are wrong when providing input VCF/BCF files with haploid male genotypes represented as 0 and 1 instead of 0/0 and 1/1. The...

Working with SVs: preserve INFO/END field after phase_common

Hi, Thank you for another amazing tool! I don't have any critical issues to report, but I have a small feature request to keep the INFO/END field in the processed...