Douglas Senalik

I'm glad this helped. But I still wonder about the history of ```public.analysis_organism``` There is a function in ```tripal_manage_analyses/tripal_manage_analyses.install```: ``` /** * Installs the organism_analysis table, migrates analysis_organism. */ function...

I looked at this issue and to me the fix could be quite simple, simply change the two regular expressions substituting ```+``` for ```*``` and now ```[]``` will not match...

I commented in the pull request why this is not enough, an underlying drupal 7 regex won't allow the square brackets through.

Example images for item #11. Added two input fields for tree name, and root taxon.  ----- Part of an example sub-tree with the root at the family level (Pittosporaceae)....

For item 18: Example image showing mouseover of interior node of a taxonomic tree 

Related drupal issue https://www.drupal.org/project/drupal/issues/3284424

That issue is a patch that would resolve this error. The error was introduced in Drupal with https://git.drupalcode.org/project/drupal/-/commit/0a7ef860a854dbe83783211d14ffe2d31300605d

I'm reopening since there is a subsequent pull request on this branch

I'm working on loading a new genome now, so I though I would investigate this. Using one short gene from that gff3 ``` Chr1 TAIR10 gene 11649 13714 . -...

Actually the error was because the cv term for ```polypeptide``` didn't get looked up, add code to make sure it gets looked up, and if not give a useful error...