dsb66

No I didn’t. I ended up exporting the data from samap and making the plot in R with ggalluvial, which I find easier to use.On Dec 6, 2023, at 11:52...

Yes, that is what I did. Here is my code for reference. On Sun, Apr 14, 2024 at 11:45 PM danielylup ***@***.***> wrote: > @dsb66 Hey! I ran into the...

The code is the Rmd attached to my last email.On Apr 15, 2024, at 11:12 PM, danielylup ***@***.***> wrote: @dsb66 Thank you very much for your reply! However I couldn't...

Installing holoviews separately fixed the issue for me: ` mamba install -c pyviz holoviews`

No I never solved the issue with the mm10 database. Either the mm10__refseq-r80__10kb_up_and_down_tss file is corrupted or there is an incompatibility between the feather software version used to create the...

I ran into a related error (`ValueError: Output dtype not compatible with inputs.`) in mapping.py at line 1538: `xs.append(sams[sid].adata[:,gns_dictO[sid]].X.astype("float16"))` Changing float16 to float32 fixed the problem, without much change in...

I don't know, I have not tested. In any case I think that the restriction numpy=1.23.5 prevents pulling much newer versions of scipy.