David Sarrut

Add a test with GenericSource and "histogram" option

Sometimes, it seems that test041_dose_actor leads to nan in the uncertainty computation. How to prevent it?

Warning during compilation

1

I got some warning during compilation (nothing urgent) ``` Running command python setup.py develop Warning: 'classifiers' should be a list, got type 'tuple' /Users/dsarrut/src/py/miniconda3/envs/opengate_3_10/lib/python3.10/site-packages/setuptools/dist.py:519: InformationOnly: Normalizing '10.0beta03 ' to '10.0b3'...

CT + voxelized source : warning to flip, rotation matrix

1

- manages the rotation (flip) matrix in the image - or at least, detect and warn user - check that the option `img_coord_system` unsure it is always correct

https://github.com/OpenGATE/opengate/blob/master/opengate/tests/src/test068_rotation_source.py When we want the source direction to follow the orientation of the attached volume, the option is 'force_rotation'. To be changed to "direction_relative_to_attached_volume" Also, change the elektaversa e- source...

- Enabled Position Independent Code (PIC) in `CMakeLists.txt` - Updated the README - correct overlap flag for nema phantom - Jaszczak phantom (empty) - workaround for TLS bug on linux...

set SetMeanEnergyPerIonPair for acollinearity

5

@MaxTousss for you ;)

Test with only windows + MT (temporary). - seems ok both MT and spawn_new process - fail proably linked to Root output somewhere ... (TBC)

The BG source is wrong, should be move by 35mm Update the associated tests.

For you @majacquet (merge this branch into your branch)