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druths
A framework (comand line tool + libraries) for creating flexible compute pipelines
The output for a task should be saved such that it can be retrieved at a later time.
The use of temporary files makes this a bit clunky, but possible to trace back to the original code block. But it would be better to transform the stack trace...
When using non-ASCII characters in `.xp` files with Python code blocks, I have to specify, ``` code.py: # -*- coding: UTF-8 -*- ... ``` for every Python code block. It...
Some of my pipelines don't write any data to file, but a corresponding data folder is created, regardless. Do you think it makes sense to not create an output folder...
``` sh task1: ### Align the networks using the CGRAAL algorithm. http://bio-nets.doc.ic.ac.uk/C-GRAAL/ Basically, a common-neighbor model. ### code.sh: touch $PLN(empty_similarity.txt) ```