Daniel Russel

Sometimes there are core dumps after running a while. /netapp/sali/nkhuri/HEMOGLOBIN/submit/new_run.sh

Alternatively, we can just make tests only be allowed to use required modules. Cpp ones currently have this requirement.

modulefinder seems like a good way to handle the .py dependencies.

Perhaps better to just inherit from Matrix. We can, for example, replicate the Eigen::Matrix (it is pretty simple) and make the template arguments what we need.

Or we can assume all code outside of the repo just uses the typedefs and so just use eigen matrix with their extension technique directly.

The main thing is to make sure that it doesn't kill compilation time. It may not make much difference as an increasingly large amount of code pulls in Eigen anyway.

In particular, nothing looks at the indexes of written pdbs.

The tricky bit would be skipping the translated attributes. There are a lot. Another alternative would be to support addition of arbitrary keys to the atom linker. That would be...

I don't see any TODO lines in modules/atom/test/expensive_test_bd.py

not straight forward, at least not without a (much needed) simplification of the current code.