Sebastian Köhler

Thanks, @matentzn. What @abdulzeedo describes sounds very similar. Let me describe my situation. I have two MacBook pros, both with 10.15.4, both with Protege 5.5 (both with increased max memory),...

Hey, thanks. this is correct in hpo. They should always have the layperson annotation. This our way of differentiating between professional and layperson terms.

ping myself @drseb for notifications

probably duplicate of https://github.com/obophenotype/human-phenotype-ontology/issues/2474 probably duplicate of https://github.com/obophenotype/human-phenotype-ontology/issues/3375 should we close the other tickets?

I seem to miss some context here, is there a document to read up what a Standard for Sharing Ontology Mappings has to do with semantic similarity computations?

BTW: semantic similarity scores are not always between 0 and 1 - if I remember correctly, even phenodigm fails in this unless you apply tricks

Normal and abnormal states are usually represented as modifiers. See e.g. the logical definition here: http://www.ontobee.org/ontology/MP?iri=http://purl.obolibrary.org/obo/MP_0005059 I do not think there will be pre-composed terms for normal/abnormal/etc. in PATO. ping...

I agree that PATO is not really consistent, given the example that you provided. I think others might want to comment on that issue (I hope), but just one last...

@matentzn I will DM you regarding a call to implement this asap

I drew a picture a while ago, maybe this also helps you: