sacha schutz

HaploView is a half heatmap showing linkage desequilibrum (LD) between mutation along a genom axis. Here, red color intensity of a square represent the LD as a value between 0...

VCF example from #128 are already annotated. It seems they used the old snpEff EFF prefixed annotations. specification are avaible here : https://pcingola.github.io/SnpEff/se_inputoutput/#eff-field-vcf-output-files

Add option for merging ( sum, avg ) of duplicates fields

### Discussed in https://github.com/labsquare/cutevariant/discussions/388 Originally posted by **NourMarzouka** April 21, 2022 I wonder if there is any plan to add an import option for the annotated JSON file from the...

It would be greate to have a workspace management to set plugin agencement : - Validation mode ( samples + genotype + variant view ) - Exploration mode etc ..

- [x] SourceEditorTri Tri par colonne non fonctionnel - [ ] FieldPzscoreTri Tri par la colonne pzscore dans Variants - [x] HoverColonne Hover sur les colonnes dans Variants - [x]...

Parser support

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Create different kind of parser - [x] Raw VCF - [x] VEP - [x] SnpEff - [ ] Annovar - [ ] Affymetrix - [ ] MAF format - [...

VariantPluginWidget ideas

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VariantPlugins are widget which get variant data from the selected one in the main view. List of plugin to do : - [x] Info variant widget ( display all fields...

Manage list type from VCFReader

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We must support list type. I suggest to create many columns as they are sub column. For instance, if you have a column as it mention from SnpSift documentation: Cases=1,2,4;...

set operation editor as a graph

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Using nodeeditor, arrange table and set operation ! VariantSet and Operation (Intersect, union, except) can be joined together as node