sacha schutz comments

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                                            sacha schutz

Cannot import MismatchCounts

Would be greate to merge this on pypi quickly !

use filename as document id when importing dataset

red hat 9 / Last docker version

Compile Rust tools

There is also [seqkit](https://bioinf.shenwei.me/seqkit/) written in go . Very useful with many sub command

Failed to load model class 'TreeModel' from module 'ipytree'

Same error from Jupyterlab ``` [Open Browser Console for more detailed log - Double click to close this message] Failed to load model class 'TreeModel' from module 'ipytree' Error: No...

Cannot use import vfc

Hi, PyVCF is not maintained anymore. We do not have any feedback from the author since a while. I suggest to use PyVCF3 instead : https://github.com/dridk/PyVCF3

ValueError: could not convert string to float: 'NA'

I fixed it by myself because my pull request has not been yet accepted : https://github.com/labsquare/cutevariant/blob/de89068619f78f5e21276394cdbb59c0d9a0b80a/cutevariant/core/reader/vcfreader.py#L10

ValueError: could not convert string to float: 'NA'

interesting..Could you share the header and the first row of your vcf where this field is locatated ?

FILTER line is malformed

Please comment this issue on pyvcf3 https://github.com/dridk/PyVCF3/issues/1

Performance improvements

Merged on https://github.com/dridk/PyVCF3/commit/9e5de0f2ce892167d5d0b13073e39864632fa308

remove use_2to3 for new setuptools

Hi, What about creating a fork and rename the project as "**PyVCF2**" in Pypi ? We will be able to merge all pull request. I create an issue here :...