Drew Szabo

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icon company University of York icon location York icon location Postdoctoral Fellow Department of Chemistry, University of York. United Kingdom

Results 8 comments of Drew Szabo

connection Error in Biocparallel for chromatogram function

I had a similar problem aligning features, and I am only able to fix it by completely disabling parallel analysis. I tried using 2 Native Windows PCs, each with relatively...

connection Error in Biocparallel for chromatogram function

Sure! Thanks for your help. ``` > sessionInfo() R version 4.2.2 (2022-10-31 ucrt) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 10 x64 (build 19043) Matrix products: default locale: [1] LC_COLLATE=English_Australia.utf8 LC_CTYPE=English_Australia.utf8...

connection Error in Biocparallel for chromatogram function

That's right. So using default parallel parameters, the error is returned. ``` > rtr mzr chrs

connection Error in Biocparallel for chromatogram function

First I tested the simple parallel task, but I had to increase the size of the list to 1,000,000 to check the performance properly. It ran 4 instances with no...

connection Error in Biocparallel for chromatogram function

Great, will do! Thanks again for your help

connection Error in Biocparallel for chromatogram function

Hmm, it seems their support page is not well maintained. There are already posts from users encountering this problem, across multiple packages, with very few suggestions from the devs or...

feature_id from aligned_features not translated to NeatMS output

[aligned_feature_table.csv](https://github.com/bihealth/NeatMS/files/9900230/aligned_feature_table.csv) Example of patRoonData extracted and aligned with XCMS. mzML files available rickhelmus/patRoonData

feature_id from aligned_features not translated to NeatMS output

Good to know, thanks! Ill use the workaround in the meantime.