Daniel Bergman
Daniel Bergman
To see this, make the template project and place the attached xml into the config folder. Run the simulation. Output should roughly match the attached video. Expected behavior: All cells...
As best I can tell, `elapsed_time_in_phase` is being saved twice: 1. https://github.com/MathCancer/PhysiCell/blob/3d7051f167b6b3551296a4b6d93db742dc532ee6/modules/PhysiCell_MultiCellDS.cpp#L1769 2. https://github.com/MathCancer/PhysiCell/blob/3d7051f167b6b3551296a4b6d93db742dc532ee6/modules/PhysiCell_MultiCellDS.cpp#L1807 Note: these two are appended to the list of labels in the output xml here: 1....
disable_bugfix did not update based on the value of legacy_cell_defaults_copy previously. This fixes that for anyone still using the old, buggy version.
# Motivating question If `cd8` attacks `tumor` with `attack_rate("tumor") = 1.0` and the `damage_rate` for `cd8` is `1.0`, how much damage do we expect a `tumor` agent to accumulate per...
Define damage rate as damage/attack. See #223.
**This PR needs feedback before merge** I know I do not pay attention to the console output at startup mostly because it goes by so fast. I barely know what...
Check that each added substrate has a unique name. Same for parameters (for a given type). Also, clean up some code to improve maintainability/readability. Suggestion for future improvement: rename some...
anybody can use the substrate coloring on svgs just by editing the config file, i.e. just by using studio. thanks @rheiland for the great suggestion!
allow for node in `` element that contains random seed info. see examples below. As discussed, the template project will continue to support the `random_seed` user parameter and will in...
Move argument parsing to new class `ArgumentParser` in `modules/PhysiCell_settings.h`. This handles the config file as arg away from `main.cpp` making that file simpler for users. Also, can pass the output...