Daniel Bergman

Results 27 comments of Daniel Bergman

As an example of unexpected behavior: The implementation of `update_dirichlet_node`, which seems meant for being the simplest way of setting a DC for a single substrate at a single voxel,...

I think this is something we want to address. It never feels right to assign a parameter value that is used only when the stars align. So, this seems like...

Can you confirm that these cells are using the Live Cell model?

I tried renaming my branch for my own book-keeping sanity. Turns out that closed the previous PR. This one is identical except for the name of my branch.

Now includes ability to read CSVs. Must be formatted similarly to .mat files: one row per voxel with columns [x,y,z,substrate_0,substrate_1,...]. Possible feature improvement: header row to identify substrate names so...

This is responsive to Issue #206

And in case there was any concern, I did look at all members of `Hypothesis_Rule` that are set in the Default Constructor and confirmed that `*pHR` has those values. OK,...

I have checked that with the second commit "Fixing the fix..." that the rules do in fact work, they are displayed as expected in standard output, and that it works...

Would there be a performance hit for allowing them to change throughout a simulation? Obviously changing them will take some time, but will even just allowing them to change cause...