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20 hours ago •
dr-joe-wirth
dr-joe-wirth
PHANTASM: PHylogenomic ANalyses for the TAxonomy and Systematics of Microbes
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make sure that the human map file does not map the same filename to multiple human names. this will cause issues when attempting to parse the blast files.
raise an error when no core genes are found for the input genomes.
all vs all blast, calculate core genes, make genet trees, make species tree, calculate cophenetic correlation coefficients.
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PHANTASM: PHylogenomic ANalyses for the TAxonomy and Systematics of Microbes