Joe Wirth (Joseph S. Wirth)

Suggestion: improve the readme with better instructions for running docker to resolve error message "XXXX is not a readable non-empty FASTA file"

1

I was working with the docker image, and kept getting the error `contig.fa is not a readable non-empty FASTA file`. I was using the following command as it is described...

make sure that the human map file does not map the same filename to multiple human names. this will cause issues when attempting to parse the blast files.

raise an error when no core genes are found for the input genomes.

all vs all blast, calculate core genes, make genet trees, make species tree, calculate cophenetic correlation coefficients.