dr-ashu-geno

Dear @srbehera Thank you for commenting on this post; I added "CIPOS=-100,100;CIEND=-100,100" to all my records and it worked; however, I'm worried about the genotyping results. I mean, doesn't adding...

Dear @ernfrid I know this is a very old issue; but may I ask how you added CIPOS and CIEND using bcftools? Any specific commands? Can bcftools calculate these CIs...

Dear @stubbsrl Could you solve the problem? My VCF files all have 10 fields in non-header lines, but I still get this error message. Any suggestions for solving the problem?...

Thank you for the reply. I realized that my problem was "passing VCF files to svtools as a list in a text file". After passing them one by one, as...

Dear @tgong1 I'm not one of the developers.. Just wanted to ask if you could realize the meaning of that coordinates? And have you noticed the SV type that SURVIVOR...

Dear Tingting Thank you so much for the quick reply. I will take a look at your tool to see if I can use it on my own data. Thanks,...

> I am also interested in this issue. Did you find a solution? @dr-ashu-geno Unfortunately no! Anyways, if you want to do genotyping for xTea output, there is a program...