Devon Ryan
Devon Ryan
Paragraph is currently not compilable because both it and the vendored graph-tools use -Werror -Wall. Patching the main paragraph CMakeLists.txt still yields: ``` 2022-11-20T17:33:07.3654873Z 17:33:07 BIOCONDA INFO (OUT) /opt/conda/conda-bld/paragraph_1668965108268/work/build/external/graphtools-src/src/graphalign/GaplessAligner.cpp: In...
Can you tag a release? That'll make it easier to put this in bioconda.
Attempting to install the most recent release will lead to the following error: ``` Traceback (most recent call last): File "setup.py", line 16, in version = re.search('^__version__\s*=\s*"(.*)"', open('rebaler/rebaler.py').read(), re.M).group(1) FileNotFoundError:...
During the most recent migration on Bioconda, I ran into compilation issues due to an API change in HDF5: ``` /opt/conda/conda-bld/nanocall_1664308975447/work/src/fast5/src/hdf5_tools.hpp:1609:60: error: no matching function for call to 'hdf5_tools::detail::Util::wrap(hdf5::herr_t (&)(hdf5::hid_t,...
It seems the most recent release has swtiched to python3 only as opposed to python2 only. While this is a very good thing, could you please update your README.md to...
On OSX CI nodes, $HOME isn't set in new shells, which always causes headaches for things like rust (e.g., https://github.com/bioconda/bioconda-recipes/pull/34374 ). We can set $HOME before running bioconda-utils, but that...
This is understandable given how it's done, but when `yaml.load` hits a duplicate key it throws an error that's passed on as a linter error that can't be skipped. That's...
The YAML parser can't handle having a `:` in the summary or description. It's not clear if it just needs to be escaped or if removal is the only option....
At least for source files from github, I presume it's possible to see that new tags are marked as "prerelease" and should therefor be skipped. Maybe this isn't actually possible,...