ENVI

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anndata.X can either be ndarray or SparseCSCMatrix.

huxs001

Hi! I am wondering which variable represent the distance matrix that can be used in other dimensional reduction algorithms? I checked the codes and tried to use the affinity matrix...

zyll123

Hi! Thank you so much for developing ENVI and COVET! I'm using covet to identify niches in cosmx data. I've two conditions and three replicates per condition; each replicate has...

sarajimenez

How to impute all genes from SC data for Spatial data

1

Thank you for developing `scENVI` — it’s a great tool! As the title says, it seems that `scENVI` only imputes highly variable genes (default: 2048) in the single-cell data, along...

wjwei-handsome