ENVI

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Question on input to ENVI

3

Hi, I have a question regarding the input to ENVI. I read in one of [your comments in another issue](https://github.com/dpeerlab/ENVI/issues/4#issuecomment-1997787689) that "Also, make sure the data is not logged (in...

soerenab

An error when installing envi

6

Hi, there is a bug when I follow the readme file to install envi: ``` File /gpfs/gibbs/project/zhao/tl688/conda_envs/envi/lib/python3.9/site-packages/jax/_src/scipy/linalg.py:403 399 del overwrite_b, debug, check_finite # unused 400 return _solve_triangular(a, b, trans, lower,...

HelloWorldLTY

Question on computing niche cell type composition

1

Dear developers, I have a question regarding computing niche cell type composition from following tutorial. [https://scenvi.readthedocs.io/en/latest/tutorial/MOp_MERFISH_tutorial.html](tut) I have two spatial dataset where one has corresponding scRNAseq but another one does...

ankitbioinfo

Question on computing niches on spatial data

2

Hey, I just want to use the COVET method to compute niches on spatial data. I have several batches in my data. Should I just use `compute_covet` function with `batch_key`...

abs51295